This map highlights the wealth of expertise in each of the 3 Enabling Technology Areas across Europe. Click on the pins to view centres of expertise, facilities and capabilities and how to access them. Our aim is to foster collaboration between scientists of diverse background focussing on carbohydrate and metrology. The map also highlights commercial suppliers (look out for the blue pin) of carbohydrates with a catalogue of more than 500 standards available.
This will be regularly updated over the lifetime of CarboMet and it is anticipated that this will be a collective resource for all to reference and contribute to.
Is something missing? Click here and fill in the form with the details so that it can be added to our map.
Online Tools and Databases
CASPER – a tool for calculating NMR chemical shifts of oligo- and polysaccharides
CAZY – Carbohydrate Active Enzymes – describes the families of structurally-related catalytic and carbohydrate binding modules (or functional domains) of enzymes that degrade, modify or create glycosidic bonds
CCRC spectral database – for Partially Methylated Alditol Acetates (PMAAs)
CFG-Glycan database – primary data sets from gene microarray screening, glycan array screening, glycan profiling and mouse phenotyping experiments
CSDB Carbohydrate Structure DataBase contains manually curated natural carbohydrate structures, taxonomy, bibliography, NMR data etc
DAGR – Database of Anti-Glycan Reagents – use to search and identify antibodies and reagent lectins to various carbohydrates
EPS database – provides access to detailed structural, taxonomic and bibliographic information on bacterial exopolysaccharide structures and properties
GLYCAN – for glycan modelling and simulation
Glycan Library – a list of approximately 830 lipid-linked sequence-defined glycan probes derived from diverse natural sources or chemically synthesised
GLYCAM Molecular Modelling Library (GMML) – assists in a variety of molecular modelling tasks, with a focus on the needs of carbohydrates
GlycoBase 3.2 – a database of over 650 N- and O- linked glycan structures HPLC, UPLC, exoglycosidase sequencing and mass spectrometry (MALDI-MS, ESI-MS, ESI-MS/MS, LC-MS, LC-ESI-MS/MS) data
Glyco3D – portal of 3D structures of mono, di, oligo and polysaccharides and carbohydrate recognizing proteins (lectin, monoclonal antibodies, glycosyltransferases and glycosaminoglycan binding proteins
Glycan Builder – a software library and set of tools to allow for the rapid drawing of glycan structures with support for all of the most common symbolic notation formats
GlycoDomainViewer – online resource to study site glycosylation with respect to protein context and conservation
GlycoEpitope – database with information on carbohydrate antigens, i.e. glyco-epitopes, and antibodies
GlycoGene DataBase includes genes associated with glycan synthesis such as glycosyltransferase, sugar nucleotide synthases, sugar-nucleotide transporters, sulfotransferases, etc.
GlycoMod – an online tool to predict oligosaccharide structures on proteins from experimentally determined masses
GlycoMiner/GlycoPattern – software tools designed to detect, characterize and perform relative quantitation of N-glycopeptides based on LC-MS runs
GlycoProtDB – database of glycoproteins mapped with actual glycosylation sites identified by mass spectrometry
Glycosciences.de – a collection of databases and bioinformatics tools for glycobiology and glycomics
GlycoStore – a curated chromatographic, electrophoretic and mass-spectrometry composition database of N-, O-, glycosphingolipid (GSL) glycans and free oligosaccharides associated with a range of glycoproteins, glycolipids and biotherapeutics
GlycoWork Bench – a software tool developed to assist the interpretation of MS data of glycans
GlyMAP – an online resource mapping out the variational landscape of glyco-active enzymes
Glyresoft – GlycReSoft is an algorithm implementing both supervised and unsupervised scoring methods to extract glycan compositions from the Decon2LS output. This application can assign peaks to both known and unknown glycan compositions and aims to ease the use of glycomics liquid chromatography/mass spectrometry (LC/MS) data.
GlyTouCan – international glycan structure repository
KEGG GLYCAN Database – Glycome informatics resource integrating genomics and chemistry
MestreJ – software for NMR prediction and interpretation
MonosaccharideDB – a comprehensive reference source for monosaccharide notation
NetOGlyc – next generation prediction of O-glycosylation sites on proteins
Stenutz – suite of resources for chemistry, mainly carbohydrate chemistry, conformational analyses and NMR spectroscopy
SugarBind – a database of known carbohydrate sequences to which pathogenic organisms (bacteria, toxins and viruses) specifically adhere
SweetUnityMol – software to display 3-D structures of carbohydrates, polysaccharides and glycoconjugates
UniCarbKB – online information storage and search platform for glycomics and glycobiology research
UniProtKB – the universal protein sequence database with information on glycosylated proteins